International Journals
[2019] S. Choobdar, M.E. Ahsen, J. Crawford, M. Tomasoni, T. Fang, D. Lamparter, J. Lin, B. Hescott, X. Hu, J. Mercer, T. Natoli, R.Narayan, L. Tichit, A. Subramanian, J. D. Zhang, G. Stolovitzky, Z. Kutalik, K. Lage, D. K. Slonim, J. Saez-Rodriguez, L. J. Cowen, S. Bergmann, D. Marbach. Assessment of network module identification across complex diseases. Nature methods 16 (9), 843-852. PDF
[2019] V. Keshri, S. M. Diene, A. Estienne, J. Dardaillon, O. Chabrol, L. Tichit, J. M. Rolain, D. Raoult, P. Pontarotti. An integrative database of β-lactamase enzymes: sequences, structures, functions and phylogenetic trees. Antimicrobial Agents and Chemotherapy, 2019. pii: AAC.02319-18. doi: 10.1128/AAC.02319-18. PDF
[2019] A. Valdeolivas, L. Tichit, C. Navarro, S. Perrin, G. Odelin, N. Levy, P. Cau, E. Remy, and A. Baudot. Random Walk with Restart on Multiplex and Heterogeneous Biological Networks. Bioinformatics, 35(3):497--505, Feb 1, 2019. PDF
[2017] G. Didier, L. Tichit. Designing optimal- and fast-on-average pattern matching algorithms. Journal of Discrete Algorithms, 42:45--60, 2017. PDF
[2016] O. Zugasti, N. Thakur, J. Belougne, B. Squiban, C. L. Kurz, J. Soulé, S. Omi, L. Tichit, N. Pujol and J. J. Ewbank. A quantitative genome-wide RNAi screen in C. elegans for antifungal innate immunity genes. BMC Biology 201614:35. DOI: 10.1186/s12915-016-0256-3. PDF
[2014] N. Thakur, N. Pujol, L. Tichit and J. J. Ewbank. Clone Mapper: An Online Suite of Tools for RNAi Experiments in Caenorhabditis elegans. G3 (Bethesda). 2014 Sep 2;4(11):2137-45. doi: 10.1534/g3.114.013052. PDF
[2014] F. Montañana, R. Julien, P. Vaglio, L. R. Matthews, L. Tichit and J. J. Ewbank. ICeE: An Interface for C. elegans Experiments. Worm, Volume 3, Issue 3. 01/2014; 3(1):e32160. DOI:10.4161/worm.32160. PDF
[2013] L. Spinelli, P. Gambette, C. Chapple, B. Robisson, A. Baudot, H. Garreta, L. Tichit, A. Guénoche and C. Brun. Clust&See: a Cytoscape plugin for the identification, visualization and manipulation of network clusters. Biosystems. 2013 Aug;113(2):91-5. Epub 2013 Jun 3. PDF
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[2013] D. Bérenguier, C. Chaouiya, P.T. Monteiro, A. Naldi, E. Remy, D. Thieffry and L. Tichit. Dynamical modeling and analysis of large cellular regulatory networks. Chaos, 23(2), 2013. PDF
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[2011] I. Engelmann, A. Griffon, L. Tichit, F. Montañana-Sanchez, G. Wang, M.-A. Felix, V. Reinke, R. Waterston, L. Hillier and J. J. Ewbank. A comprehensive analysis of gene expression changes provoked by bacterial and fungal infection in C. elegans. PLoS One. 2011;6(5):e19055. Epub 2011 May 13. PDF
[2010] A. Guénoche, H. Garreta and L. Tichit. About the largest subtree common to several X-trees. Mathematics and Social Sciences, 190(2):115--124, Summer 2010. PDF
[2009] C. Herrmann, S. Bérard and L. Tichit. SimCT: a generic tool to visualize ontology-based relationships for biological objects. Bioinformatics 25(23): 3197-3198 (2009). PDF
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[2007] P. Ferraro, A. Ouangraoua, L. Tichit and S. Dulucq. Local similarity between quotiented ordered trees. Journal of Discrete Algorithms, Volume 5, Issue 1, March 2007, Pages 23-35. PDF
[2003] S. Dulucq and L. Tichit. RNA secondary structure comparison: exact analysis of the Zhang-Shasha tree edit algorithm. Theoretical Computer Science, Elsevier, 2003, 306, pp. 471-484. PS
Proceedings of International Conferences
[2019] Leandro Correa, Laurent Tichit, Denis Pallez, Olivier Soriani, and Claude Pasquier. Population-based meta-heuristic for active modules identification. In CSBio 2019 : Proceedings of the 10th International Conference on Computational Systems-Biology and Bioinformatics, Nice, France, 4-7 December, 2019. ACM. ACCEPTED
[2009] A. Guénoche, H. Garreta and L. Tichit. About the largest subtree common to several phylogenetic trees, Proceedings of ASMDA'09, Jansen et al. (Eds.), pp 6 - 10. PDF
Proceedings of National Conferences (in English)
[2017] A. Valdeolivas, E. Remy, L. Tichit, G. Odelin, C. Navarro, S. Perrin, P. Cau, N. Levy and A. Baudot. Prediction of Disease-associated Genes by advanced Random Walk with Restart on Multiplex and Heterogeneous Biological Networks. Proceedings of JOBIM'17, 18th Open Days in Biology, Computer Science and Mathematics. Lille, July 2017. -
[2012] C. Chaouiya, A. Naldi, L. Spinelli, P. Monteiro, D. Berenguier, L. Grieco, A. Mbodj, S. Collombet, A. Niarakis, L. Tichit, C Remy and D. Thieffry. Logical modelling of cellular decision processes with GINsim. Proceedings of JOBIM'12, 13th Open Days in Biology, Computer Science and Mathematics. Rennes, June 2012. -
[2011] L. Tichit, P. Gambette and A. Guénoche. ModClust: a Cytoscape plugin for modularity- based clustering of networks. Proceedings of MARAMI 2011. Grenoble, November 2011. PDF
[2005] S. Bérard, L. Tichit and C. Herrmann. Cluster Inspector: a tool to visualize ontology-based relationships between biological entities. Proceedings of JOBIM'05, 6th Open Days in Biology, Computer Science and Mathematics. Lyon, July 2005. PDF
[2004] P. Ferraro, L. Tichit and S. Dulucq. Local similarity between trees. Proceedings of JOBIM'04, 5th Open Days in Biology, Computer Science and Mathematics. Montreal, June 2004. PS
Proceedings of National Conferences (in French)  French Flag
[2009] N. Gala, V. Rey and L. Tichit. Dispersion semantique dans des familles morpho-phonologiques : éléments théoriques et empiriques. Actes de TALN'09 : Traitement Automatique des Langues Naturelles, Senlis, juin 2009. PDF
[2001] S. Dulucq and L. Tichit. À propos de la comparaison de structures secondaires d'ARN. Actes de JOBIM'01, 2èmes Journées Ouvertes Biologie Informatique Mathématiques, pp. 125-134, Toulouse, juin 2001. PS
[2001] S. Dulucq and L. Tichit. Les arbres pour la comparaison de structures secondaires d'ARN. Actes de 4th GASCom'2001 Random Generation of Combinatorial Structures and Bijective Combinatorics, Siena, Italy, pp. 53-58, November 2001. PS

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