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International Journal Papers
[2017] G. Didier, L. Tichit. Designing optimal- and fast-on-average pattern matching algorithms. Journal of Discrete Algorithms, 42:45--60, 2017. -
[2016] O. Zugasti, N. Thakur, J. Belougne, B. Squiban, C. L. Kurz, J. Soulé, S. Omi, L. Tichit, N. Pujol and J. J. Ewbank. A quantitative genome-wide RNAi screen in C. elegans for antifungal innate immunity genes. BMC Biology201614:35. DOI: 10.1186/s12915-016-0256-3. -
[2014] N. Thakur, N. Pujol, L. Tichit and J. J. Ewbank. Clone Mapper: An Online Suite of Tools for RNAi Experiments in Caenorhabditis elegans. G3 (Bethesda). 2014 Sep 2;4(11):2137-45. doi: 10.1534/g3.114.013052. PDF
[2014] F. Montañana, R. Julien, P. Vaglio, L. R. Matthews, L. Tichit and J. J. Ewbank. ICeE: An Interface for C. elegans Experiments. Worm, Volume 3, Issue 3. 01/2014; 3(1):e32160. DOI:10.4161/worm.32160. PDF
[2013] L. Spinelli, P. Gambette, C. Chapple, B. Robisson, A. Baudot, H. Garreta, L. Tichit, A. Guénoche and C. Brun. Clust&See: a Cytoscape plugin for the identification, visualization and manipulation of network clusters. Biosystems. 2013 Aug;113(2):91-5. Epub 2013 Jun 3. PDF
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[2013] D. Bérenguier, C. Chaouiya, P.T. Monteiro, A. Naldi, E. Remy, D. Thieffry and L. Tichit. Dynamical modeling and analysis of large cellular regulatory networks. Chaos, 23(2), 2013. PDF
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[2011] I. Engelmann, A. Griffon, L. Tichit, F. Montañana-Sanchez, G. Wang, M.-A. Felix, V. Reinke, R. Waterston, L. Hillier and J. J. Ewbank. A comprehensive analysis of gene expression changes provoked by bacterial and fungal infection in C. elegans. PLoS One. 2011;6(5):e19055. Epub 2011 May 13. PDF
[2010] A. Guénoche, H. Garreta and L. Tichit. About the largest subtree common to several X-trees. Mathematics and Social Sciences, 190(2):115--124, Summer 2010. PDF
[2009] C. Herrmann, S. Bérard and L. Tichit. SimCT: a generic tool to visualize ontology-based relationships for biological objects. Bioinformatics 25(23): 3197-3198 (2009). PDF
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[2007] P. Ferraro, A. Ouangraoua, L. Tichit and S. Dulucq. Local similarity between quotiented ordered trees. Journal of Discrete Algorithms, Volume 5, Issue 1, March 2007, Pages 23-35. PDF
[2003] S. Dulucq and L. Tichit. RNA secondary structure comparison: exact analysis of the Zhang-Shasha tree edit algorithm. Theoretical Computer Science, Elsevier, 2003, 306, pp. 471-484. PS
Proceedings of International Conferences
[2009] A. Guénoche, H. Garreta and L. Tichit. About the largest subtree common to several phylogenetic trees, Proceedings ASMDA'09, Jansen et al. (Eds.), pp 6 - 10. PDF
Proceedings of National Conferences (in English)
[2017] A. Valdeolivas, E. Remy, L. Tichit, G. Odelin, C. Navarro, S. Perrin, P. Cau, N. Levy and A. Baudot. Prediction of Disease-associated Genes by advanced Random Walk with Restart on Multiplex and Heterogeneous Biological Networks. Conference JOBIM'17, 18th Open Days in Biology, Computer Science and Mathematics. Lille, July 2017. PDF
[2012] C. Chaouiya, A. Naldi, L. Spinelli, P. Monteiro, D. Berenguier, L. Grieco, A. Mbodj, S. Collombet, A. Niarakis, L. Tichit, C Remy and D. Thieffry. Logical modelling of cellular decision processes with GINsim. Conference JOBIM'12, 13th Open Days in Biology, Computer Science and Mathematics. Rennes, June 2012. PDF
[2011] L. Tichit, P. Gambette and A. Guénoche. ModClust: a Cytoscape plugin for modularity- based clustering of networks. Conference MARAMI 2011. Grenoble, November 2011. PDF
[2005] S. Bérard, L. Tichit and C. Herrmann. Cluster Inspector: a tool to visualize ontology-based relationships between biological entities. Conference JOBIM'05, 6th Open Days in Biology, Computer Science and Mathematics. Lyon, July 2005. PDF
[2004] P. Ferraro, L. Tichit and S. Dulucq. Local similarity between trees. Conference JOBIM'04, 5th Open Days in Biology, Computer Science and Mathematics. Montreal, June 2004. PS
Proceedings of National Conferences (in French)  French Flag
[2009] N. Gala, V. Rey and L. Tichit. Dispersion semantique dans des familles morpho-phonologiques : éléments théoriques et empiriques. Actes de TALN'09 : Traitement Automatique des Langues Naturelles, Senlis, juin 2009. PDF
[2001] S. Dulucq and L. Tichit. A propos de la comparaison de structures secondaires d'ARN. Actes du Colloque JOBIM'01, 2èmes Journées Ouvertes Biologie Informatique Mathématiques, pp. 125-134, Toulouse, juin 2001. PS
[2001] S. Dulucq and L. Tichit. Les arbres pour la comparaison de structures secondaires d'ARN. 4th colloquium GASCom'2001 Random Generation of Combinatorial Structures and Bijective Combinatorics, Siena, Italy, pp. 53-58, November 2001. PS
Communications in International Conferences (no proceedings)
[2012] D. Berenguier, L. Tichit, C. Chaouiya, A. Naldi, T. Graf, D. Thieffry and E. Remy. A compaction of discrete network dynamics emphasizing differentiation decisions, 11th European Conference on Computational Biology, Basel, Switzerland, 2012. -
Communications in National Conferences (in English, no proceedings)
[2012] S. Audebert, A. Baudot, C. Brun, L. Camoin, M. Katsogiannou, E. Remy, P. Rocchi and L. Tichit. Hsp27 Functions in Castration-Resistant Prostate Cancer: A Systems Biology Approach. Prospectom, Grenoble, 2012.
[2012] L. Tichit, A. Guénoche, A. Baudot, P. Gambette, C. Brun, B. Robisson, C. Chapple, H. Garreta and L. Spinelli. Clust&See: a Cytoscape plugin for identification, visualization and manipulation of network clusters. Prospectom, Grenoble, 2012. PDF

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