Élisabeth REMY
Institut de Mathématiques
de Luminy
Equipe Méthodes Mathématiques pour la Génomique
(MMG)
Campus de Luminy
Case 907
163 avenue de Luminy
13288 Marseille Cedex 9
Tél. 04 91 26 95 65
Fax. 04 91 26 96 65
Publications
- F.
Lopez, J.
Textoris,
A. Bergon, G. Didier, E. Remy, S. Granjeau, J. Imbert, C. Nguyen and D.
Puthier:
TranscriptomeBrowser:
A Powerfull and Flexible Toolbox to Explore Productively the
Transcriptional Landscape of the Gene Expression Omnibus Database. PLoS ONE 3(12):e400. 2008. doi
- E. Remy and P.
Ruet: From elementary signed circuits to the
dynamics of Boolean regulatory networks. Bioinformatics 24: i200-i226,
2008.
- E. Remy, P. Ruet and D. Thieffry: Graphic
requirement for multistability and attractive cycles in a Boolean
dynamical framework. Advances in Applied Mathematics, 41(3):335-350,
2008. pdf
- C. Chaouiya, E. Remy, D. Thieffry: Petri
Net Modelling of Biological regulatory networks.
Journal of Discrete Algorithms, 6:2, 165-77, 2008. doi
- J. Textoris, F.
Lopez, G. Didier, E. Remy, S. Granjeau, C. Nguyen and D. Puthier:
DBF-MCL a new algorithm for rapidly and accurately axtracting cluster
of co-regulated genes from microarray data. JOBIM Marseille, 2007.
- É.
Remy, P.
Ruet, D. Thieffry: Positive or negative regulatory
circuit inference from multilevel dynamics. Positive Systems:
Theory and Applications, Springer LNCIS 341: 263-270, 2006.
- É.
Remy and P. Ruet: On differentiation and
homeostatic behaviours of Boolean dynamical systems.Transactions on
Computational Systems Biology VII, Springer LNCS 4230: 153-162, 2006. http://www.springerlink.com/content/f671307011402685/
- E. Remy, P. Ruet , L. Mendoza, D. Thieffry and
C.
Chaouiya:
From logical regulatory graphs to standard Petri nets: Dynamical roles
and functionality of feedback circuits.Transactions on
Computational Systems Biology VII, Springer LNCS 4230: 56-72, 2006. http://www.springerlink.com/content/w30180884311g787/
- E. Simao, E. Remy,
D. Thieffry and C. Chaouiya:
Qualitative
modelling of regulated metabolic pathway: Application to the
Tryptophan biosynthesis in E. Coli. Bioinformatics. 21:
ii190-196 (2005).
- C. Chaouiya, E. Remy, D. Thieffry: Qualitative
Petri Net Modelling of Genetic Networks. In C.Priami and G.Plotkin
(Eds), Trans. on Comput. Syst. Biol. VI, LNBI 4220:95-112. 2006.doi
- C. Chaouiya, E. Remy, P. Ruet , D. Thieffry: Qualitative
Modelling of Genetic Networks: From Logical Regulatory Graphs to
Standard Petri Nets. In ICATPN'04, LNCS 3099, pp.137-156. 2004. doi
- D. Martin, C. Brun, E. Remy, P.
Mouren, D. Thieffry and B. Jacq: GOToolBox: functional analysis of gene
datasets based on Gene Ontology. Genome Biology, vol.5,n. R101, 2004.
- P. Mathieu and E.
Remy: Isoperimetry and heat kernel decay on percolation clusters.
Annals
of Probability, 32,n. 1A, pp100--128, 2004. Arxiv
- C. Chaouiya , E.
Remy, B. Mossé, and
D. Thieffry: Qualitative analysis of regulatory graphs: a computational
tool based on a discrete formal framework. In "First multidisciplinary
international symposium on POsitive Systems: Theory and Applications"
(POSTA 2003), L. Benvenuti, A. De Santis, L. Farina (Eds),
Springer-Verlag, LNCIS 294, pp. 119-126, 2003.doi
- E.
Remy, B. Mossé, C. Chaouiya and D. Thieffry: A
description of dynamical graphs associated to elementary regulatory
circuits. Bioinformatics vol.19 (Suppl. 2), pp.172--178, 2003.
- G. Didier, P. Brézellec,
E. Remy and A. Hénaut: GeneANOVA - gene expression analysis of
variance. Bioinformatics Applications Note vol. 18, pp.1-2, 2002.
- P. Mathieu and E.
Remy: Décroissance du noyau de la chaleur et isop\'erim\'etrie
sur un amas de percolation CRAS Paris, T. 332, série I, pp.
927-931, 2001.
- A. Piatnitski and E.
Remy: Homogenization of elliptic difference operator. SIAM J. Math.
Anal. vol. 33, n.1, pp.53-83, 2001.
Quelques Liens
- Séminaire
MEG
- Séminaire
interdisciplinaire MAGMA
(Mathématiques Appliqués à la Génomique :
Modèles et Algorithmes)
- Marseille-Nice
Genopole
- Société
française de bio-informatique SFBI
- ACI LumImDynNet
- ARC MOCA